OBO Foundry dashboard analysis¶

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/tmp/ipykernel_4881/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax           29
Turtle                   28
unknown                   1
OWL/XML Syntax            1
OWL Functional Syntax     1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 58 5696.583333 20061.915161 0.0 198.25 1089.0 2302.50 124680.0
Declaration 58 1088.000000 3219.271525 0.0 97.75 390.0 857.50 22818.0
SubClassOf 56 1384.150000 4363.409702 0.0 27.50 288.0 878.00 24611.0
ObjectPropertyRange 52 35.750000 35.282696 0.0 12.00 26.5 53.25 150.0
ObjectPropertyDomain 51 33.983333 35.693845 0.0 8.00 22.5 55.50 148.0
DataPropertyRange 46 11.200000 17.861805 0.0 1.00 5.0 11.00 97.0
SubObjectPropertyOf 45 46.716667 61.449191 0.0 0.75 26.0 63.25 282.0
InverseObjectProperties 43 12.766667 22.493967 0.0 0.00 3.0 17.00 128.0
DataPropertyDomain 42 11.266667 31.916664 0.0 0.00 2.0 7.00 235.0
ClassAssertion 41 114.400000 364.787386 0.0 0.00 2.0 21.00 1952.0
DisjointClasses 41 224.266667 1583.346069 0.0 0.00 3.5 20.00 12277.0
EquivalentClasses 37 149.766667 793.282931 0.0 0.00 7.0 63.25 6154.0
SubDataPropertyOf 31 5.516667 10.725373 0.0 0.00 1.0 7.00 63.0
TransitiveObjectProperty 30 3.816667 6.397806 0.0 0.00 0.5 5.00 30.0
SubAnnotationPropertyOf 30 12.550000 32.976841 0.0 0.00 1.0 11.00 228.0
FunctionalObjectProperty 28 2.583333 4.068447 0.0 0.00 0.0 4.00 17.0
FunctionalDataProperty 24 1.700000 3.928600 0.0 0.00 0.0 2.00 22.0
InverseFunctionalObjectProperty 22 1.516667 2.752451 0.0 0.00 0.0 1.00 12.0
AnnotationPropertyRangeOf 22 5.716667 18.277607 0.0 0.00 0.0 2.00 134.0
SymmetricObjectProperty 20 2.883333 6.020000 0.0 0.00 0.0 2.50 35.0
IrrefexiveObjectProperty 19 3.133333 6.634442 0.0 0.00 0.0 1.00 24.0
AsymmetricObjectProperty 17 2.683333 5.735680 0.0 0.00 0.0 1.00 20.0
ObjectPropertyAssertion 17 235.833333 1342.722433 0.0 0.00 0.0 2.25 10226.0
DisjointUnion 13 6.733333 19.291578 0.0 0.00 0.0 0.00 116.0
DataPropertyAssertion 13 91.900000 485.210760 0.0 0.00 0.0 0.00 3617.0
SubPropertyChainOf 12 3.300000 15.803132 0.0 0.00 0.0 0.00 120.0
AnnotationPropertyDomain 8 0.233333 0.851055 0.0 0.00 0.0 0.00 6.0
ReflexiveObjectProperty 7 0.150000 0.480995 0.0 0.00 0.0 0.00 3.0
EquivalentObjectProperties 7 1.150000 4.915644 0.0 0.00 0.0 0.00 36.0
DifferentIndividuals 6 0.350000 1.325436 0.0 0.00 0.0 0.00 7.0
DisjointObjectProperties 5 0.300000 1.441515 0.0 0.00 0.0 0.00 10.0
Rule 5 0.700000 3.445951 0.0 0.00 0.0 0.00 25.0
SameIndividual 3 0.516667 2.507559 0.0 0.00 0.0 0.00 17.0
NegativeObjectPropertyAssertion 2 0.033333 0.181020 0.0 0.00 0.0 0.00 1.0
EquivalentDataProperties 2 0.250000 1.433557 0.0 0.00 0.0 0.00 10.0
DatatypeDefinition 2 0.333333 2.454098 0.0 0.00 0.0 0.00 19.0
DisjointDataProperties 1 0.033333 0.258199 0.0 0.00 0.0 0.00 2.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 59 4820.716667 13932.739834 0.0 214.75 1125.0 2673.50 78659.0
ObjectUnionOf 41 15.400000 22.959212 0.0 0.00 5.5 13.25 88.0
ObjectAllValuesFrom 36 28.133333 59.459847 0.0 0.00 5.0 40.25 400.0
ObjectSomeValuesFrom 35 398.000000 2149.976996 0.0 0.00 6.5 94.00 16630.0
ObjectIntersectionOf 31 135.683333 803.798282 0.0 0.00 1.0 17.50 6224.0
ObjectExactCardinality 28 5.616667 16.405964 0.0 0.00 0.0 5.00 115.0
DataExactCardinality 23 2.450000 4.228335 0.0 0.00 0.0 3.00 18.0
DataHasValue 18 28.833333 76.416381 0.0 0.00 0.0 4.00 494.0
DataAllValuesFrom 18 0.966667 1.868260 0.0 0.00 0.0 1.25 9.0
ObjectComplementOf 17 5.450000 23.590019 0.0 0.00 0.0 3.25 179.0
DataSomeValuesFrom 17 1.483333 3.275444 0.0 0.00 0.0 2.00 17.0
ObjectHasValue 15 8.950000 32.150296 0.0 0.00 0.0 0.25 189.0
ObjectMinCardinality 14 1.400000 4.231440 0.0 0.00 0.0 0.00 28.0
ObjectMaxCardinality 12 15.750000 115.375235 0.0 0.00 0.0 0.00 894.0
ObjectOneOf 10 12.450000 53.601930 0.0 0.00 0.0 0.00 275.0
DataMaxCardinality 6 1.716667 8.409219 0.0 0.00 0.0 0.00 62.0
DataMinCardinality 4 0.283333 1.814178 0.0 0.00 0.0 0.00 14.0
ObjectHasSelf 1 0.016667 0.129099 0.0 0.00 0.0 0.00 1.0

OBO Score (Experimental)

ontology score score_dash score_impact
35 PATO 0.345 0.556 0.133
37 PROVO 0.344 0.504 0.183
17 FOAF 0.342 0.333 0.350
30 OBO 0.335 0.571 0.100
19 IAO 0.300 0.600 0.000
22 MDO 0.285 0.571 0.000
49 enanomapper 0.285 0.571 0.000
0 AMONTOLOGY 0.285 0.571 0.000
31 OEO 0.285 0.571 0.000
26 MaterialsMine 0.275 0.549 0.000
4 CHAMEO 0.275 0.549 0.000
13 EMMO_crystallography 0.275 0.549 0.000
38 QUDT 0.275 0.549 0.000
8 EMMO 0.275 0.549 0.000
36 PMD 0.275 0.549 0.000
15 EMMO_mechanical_testing 0.264 0.527 0.000
11 EMMO_Datamodel 0.264 0.527 0.000
1 BWMD-DOMAIN 0.252 0.504 0.000
2 BWMD-MID 0.252 0.504 0.000
3 CCO 0.252 0.504 0.000
12 EMMO_atomistic 0.252 0.504 0.000
14 EMMO_mappings 0.252 0.504 0.000
41 SEMMD 0.252 0.504 0.000
40 SAREF 0.241 0.482 0.000
50 m4i 0.241 0.482 0.000
46 UO 0.234 0.467 0.000
21 MAMBO 0.234 0.467 0.000
44 SP 0.234 0.467 0.000
43 SO 0.234 0.467 0.000
27 NPO 0.234 0.467 0.000
16 EMMO_microstructure 0.234 0.467 0.000
32 OM 0.234 0.467 0.000
6 DEB 0.234 0.467 0.000
5 CIF 0.222 0.444 0.000
7 DISO 0.222 0.444 0.000
25 MatOnto 0.222 0.444 0.000
55 nfdicore 0.222 0.444 0.000
18 GPO 0.222 0.444 0.000
9 EMMO_BVC 0.222 0.444 0.000
53 mvc 0.222 0.444 0.000
24 MSEO 0.222 0.444 0.000
28 NanoMine 0.222 0.444 0.000
51 mat 0.222 0.444 0.000
29 OA 0.222 0.444 0.000
20 LPBFO 0.219 0.438 0.000
23 MOL_TENSILE 0.208 0.416 0.000
47 WILD 0.200 0.400 0.000
34 P-Plan 0.200 0.400 0.000
58 periodictable 0.200 0.400 0.000
57 opmw 0.200 0.400 0.000
42 SKOS_MDO 0.200 0.400 0.000
33 OSMO 0.189 0.378 0.000
48 bmo 0.189 0.378 0.000
54 mwo 0.189 0.378 0.000
45 SSN 0.189 0.378 0.000
39 QUDV 0.167 0.333 0.000
52 matinfo 0.167 0.333 0.000
59 ssos 0.155 0.311 0.000
56 ontorule 0.155 0.311 0.000
10 EMMO_BattINFO 0.000 0.000 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 60.0 0.235317 0.053274 0.0 0.21625 0.234 0.26675 0.345
score_dash 60.0 0.457633 0.093521 0.0 0.41200 0.467 0.50975 0.600
score_impact 60.0 0.012767 0.054290 0.0 0.00000 0.000 0.00000 0.350

OBO dependency graph